PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625396.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 329aa    MW: 38185.9 Da    PI: 8.7838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.9e-50351692128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv++yLk+kve+kk+++ + ikevdiyk++PwdLp ++v  + kewyfFs r +ky+++ r+nr+t sg+Wkatg dk+++s+
  XP_009625396.1  35 LPGFRFHPTDEELVSFYLKRKVENKKIKI-DLIKEVDIYKHDPWDLPrNTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSS 128
                     59***************************.99***************667777788**************************************9 PP

             NAM  96 ........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_009625396.1 129 ttttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 169
                     776655544445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5332200IPR003441NAC domain
PROSITE profilePS5100551.39334201IPR003441NAC domain
PfamPF023651.6E-2536169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSEKRAEKIE NMELVENISA NTNIKAEDEE EMMQLPGFRF HPTDEELVSF YLKRKVENKK  60
IKIDLIKEVD IYKHDPWDLP RNTVGDNCKE WYFFSMRGRK YRNSVRPNRV TGSGFWKATG  120
IDKPIYSSTT TTSQSTDREC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNWKTSNQQL  180
PNPKNIIPEA EVWTLCRIFK RTSNYKRFTP DWKQPVIKQS FGDASSKACS LQSETSDDHS  240
ININFNKMEF PHKKNNTATG GNYQVDQKTT HYQNSQPIIT MPQSSITSSN SSFWNTSAEE  300
EYLFSDGNWD ELKSVVDLAI DPRSLFGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-48212071171NO APICAL MERISTEM PROTEIN
1ut4_B6e-48212071171NO APICAL MERISTEM PROTEIN
1ut7_A6e-48212071171NO APICAL MERISTEM PROTEIN
1ut7_B6e-48212071171NO APICAL MERISTEM PROTEIN
4dul_A6e-48212071171NAC domain-containing protein 19
4dul_B6e-48212071171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754468e-50HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625396.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK554e-90NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4CER11e-167K4CER1_SOLLC; Uncharacterized protein
STRINGSolyc07g045030.2.11e-167(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-86NAC domain containing protein 42